Information for 6-GCHGHAABTACGTTHG (Motif 9)

A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
Reverse Opposite:
A G T C C T G A C G T A C G T A A G T C A C T G A G C T C G T A T A C G A C G T A G C T C G T A A G T C C T G A A C T G G T A C
p-value:1e-7
log p-value:-1.665e+01
Information Content per bp:1.687
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 7.0bp
Average Position of motif in Background38.0 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GCHGHAABTACGTTHG
----TAATTNVATTAN
 A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
A C G T A C G T A C G T A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GCHGHAABTACGTTHG
----TAATTAAATTA-
 A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
A C G T A C G T A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GCHGHAABTACGTTHG
----TAATTAAATTA-
 A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCHGHAABTACGTTHG
----TAATYNRATTAR
 A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
A C G T A C G T A C G T A C G T G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

PROP1/MA0715.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCHGHAABTACGTTHG
----TAATTAAATTA-
 A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
A C G T A C G T A C G T A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A A C G T

PH0103.1_Meox1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCHGHAABTACGTTHG
GAGGTAATTACCTCAG
 A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
T C A G T G C A C A T G C A T G G A C T T G C A G C T A C A G T A C G T C T G A A T G C G T A C G A C T A G T C C G T A C T A G

PH0072.1_Hoxc8/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCHGHAABTACGTTHG
TTGGGGTAATTAACGT--
 A C G T A C G T A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T A C G T A C G T

PH0071.1_Hoxc6/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCHGHAABTACGTTHG
NNTNATTAATTAATTTG-
 A C G T A C G T A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
G C A T A C G T A G C T G C A T T G C A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A G C T C G A T G A C T T C A G A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCHGHAABTACGTTHG
NTNAGGTAATTACCTT--
 A C G T A C G T A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCHGHAABTACGTTHG
TAGGTAATAAAATTCA
 A C T G G T A C G A C T C T A G G A C T C T G A C G T A A C G T C G A T C T G A G T A C C T A G A C G T A C G T G A C T C T A G
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A