Information for 21-GAAAAATCATGGA (Motif 41)

A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A G T C
p-value:1e-3
log p-value:-7.946e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GAAAAATCATGGA-
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Gfi1/MA0038.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAAAAATCATGGA
--CAAATCACTG-
 A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAAAAATCATGGA
-AAAAGTCAA---
 A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAAAAATCATGGA
ATGAATATTCATGAG
 A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

ONECUT3/MA0757.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAAAAATCATGGA-
AAAAAATCAATAAT
 A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

PB0136.1_IRC900814_2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAAAAATCATGGA-
ATGGAAAGTCGTAAAA
 A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAAAAATCATGGA
GAATATTCAT---
 A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAAAAATCATGGA
-AAAGATCAAAGG
 A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAAAAATCATGGA
GGCCATAAATCAC---
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAAAAATCATGGA
GGCCATAAATCA----
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A G T C C G T A A C G T A C T G A C T G C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T