Information for 3-GATGCTGCATTAGVHT (Motif 4)

A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
Reverse Opposite:
C T G A C A G T A C G T A G T C A C G T G T C A G T C A A C G T A C T G G A T C C G T A A C T G A G T C G T C A A G C T T A G C
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.693
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif18.75%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.7 +/- 26.0bp
Average Position of motif in Background57.8 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GATGCTGCATTAGVHT
--NGCTN---------
 A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GATGCTGCATTAGVHT
ACATGCTACCTAATAC-
 A C G T A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GATGCTGCATTAGVHT
TNNTGCTACTGTNNNN-
 A C G T A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GATGCTGCATTAGVHT
CNNNGCTACTGTANNN-
 A C G T A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GATGCTGCATTAGVHT
NTTGATACATT-----
 A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GATGCTGCATTAGVHT
---GCTTCC-------
 A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GATGCTGCATTAGVHT
ACTTGCTACCTACACC-
 A C G T A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GATGCTGCATTAGVHT
AGATGCTRCTRCCHT--
 A C G T A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GATGCTGCATTAGVHT
--TGCTGACTCA----
 A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GATGCTGCATTAGVHT
---GCTCCG-------
 A T C G C T G A C A G T C T A G A G T C A C G T C T A G A G T C G T C A C A G T A C G T T G C A T C A G T C G A G A C T A G C T
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T