Information for 19-AGGATAAATGAGC (Motif 39)

C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C A C G T
p-value:1e-3
log p-value:-7.946e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0138.1_Pitx2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGGATAAATGAGC
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

POU6F2/MA0793.1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGGATAAATGAGC-
----NTAATGAGCT
 C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGATAAATGAGC
-TGATTRATGGCY
 C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGATAAATGAGC
-TGATTGATGA--
 C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGGATAAATGAGC
--GCTAAACGGT-
 C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGGATAAATGAGC
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGATAAATGAGC
ATGATKGATGRC-
 C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGGATAAATGAGC
NGGATTAA-----
 C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGGATAAATGAGC---
-GTATAAAAGGCGGGG
 C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGGATAAATGAGC---
-GTATAAAAGGCGGGG
 C G T A A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C T G C G T A A C T G A G T C A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G