Information for 4-AAGTTCACGA (Motif 30)

C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C G T A C T G C G T A C G T A A G T C A C G T A C G T
p-value:1e-3
log p-value:-7.946e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets90.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AAGTTCACGA
AAGGTCAC--
 C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----AAGTTCACGA-
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Hoxa11/MA0911.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAGTTCACGA--
ANTTTTACGACC
 C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AAGTTCACGA
TCAAGGTCAN--
 A C G T A C G T C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAGTTCACGA-
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AAGTTCACGA-----
NNNATTTTACGACNNTN
 A C G T A C G T C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AAGTTCACGA--
-NTTTTACGACC
 C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T
A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTCACGA-----
ANATTTTACGAGNNNN
 A C G T C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AAGTTCACGA-----
ANNATTTTACGACNTNA
 A C G T A C G T C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

PH0067.1_Hoxc12/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AAGTTCACGA-----
GNNNTTTTACGACCTNA
 A C G T A C G T C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A