Information for 13-YKSSWYCRGWCKG (Motif 25)

A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G
Reverse Opposite:
A G T C G T C A A C T G C G T A A G T C A G C T A C T G C T A G C G T A A T G C A T G C G T C A T C A G
p-value:1e-4
log p-value:-1.030e+01
Information Content per bp:1.745
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif24.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets32.0 +/- 2.0bp
Average Position of motif in Background40.1 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:YKSSWYCRGWCKG
-----CCAGACAG
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:YKSSWYCRGWCKG--
-----CCAGACRSVB
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:YKSSWYCRGWCKG----
CAAATCCAGACATCACA
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:YKSSWYCRGWCKG
-----BCAGACWA
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.50
Offset:7
Orientation:forward strand
Alignment:YKSSWYCRGWCKG----
-------GGTCTGGCAT
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----YKSSWYCRGWCKG--
GCCTCCTCCMTCWGACTGKS
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

GLI2/MA0734.1/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:forward strand
Alignment:YKSSWYCRGWCKG
-GCGACCACACTG
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G
A C G T C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

POL002.1_INR/Jaspar

Match Rank:8
Score:0.47
Offset:5
Orientation:forward strand
Alignment:YKSSWYCRGWCKG
-----TCAGTCTT
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.47
Offset:9
Orientation:forward strand
Alignment:YKSSWYCRGWCKG--
---------GCTGTG
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

NFYA/MA0060.2/Jaspar

Match Rank:10
Score:0.46
Offset:1
Orientation:reverse strand
Alignment:YKSSWYCRGWCKG------
-TGGACCAATCAGCACTCT
 A G C T A C G T A T C G A T C G C G A T A G T C A G T C C T G A A C T G C G A T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T