Information for 1-AAABVCAAAGBBCTGG (Motif 1)

C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G T A C G T A C G A G T C A C G T C G A T A C G T A C T G A C G T T A C G A G C T A C G T A C G T
p-value:1e-11
log p-value:-2.583e+01
Information Content per bp:1.775
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif18.75%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.7 +/- 35.1bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAABVCAAAGBBCTGG
AGAGTCCAAAGTCCA--
 A C G T C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAABVCAAAGBBCTGG
CANAGNNCAAAGTCCA--
 A C G T A C G T C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAABVCAAAGBBCTGG
-AAAACAAAGG-----
 C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAABVCAAAGBBCTGG
AAACAGACAAAGGAAT--
 A C G T A C G T C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AAABVCAAAGBBCTGG
----ACAAAG------
 C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:AAABVCAAAGBBCTGG
--------AGGCCTNG
 C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AAABVCAAAGBBCTGG
-VRRACAAWGG-----
 C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AAABVCAAAGBBCTGG
-----CAAAGGTCAG-
 C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAABVCAAAGBBCTGG
AAAGATCAAAGG-----
 A C G T C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AAABVCAAAGBBCTGG
AAAGATCAAAGGGTT--
 A C G T C G T A G T C A C T G A A C G T T A C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T G T A C A C G T A C T G A C T G
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T A C G T A C G T