Information for 6-CAGCTAATGKCTC (Motif 5)

T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
Reverse Opposite:
A T C G C T G A A C T G G T A C A T G C C G T A C G A T A C G T C G T A T A C G A G T C A C G T A C T G
p-value:1e-15
log p-value:-3.663e+01
Information Content per bp:1.835
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 23.4bp
Average Position of motif in Background47.1 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CAGCTAATGKCTC
--GTTAATGGCC-
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

VENTX/MA0724.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CAGCTAATGKCTC
---CTAATCGNT-
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CAGCTAATGKCTC
---NTAATTGN--
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAGCTAATGKCTC
--NNTAATTANN-
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAGCTAATGKCTC-
GNNAGCTAATCCCCCN
 A C G T A C G T T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAGCTAATGKCTC
---CTAATKGV--
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAGCTAATGKCTC
--GCTAATTGCT-
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAGCTAATGKCTC
--GKTAATGR---
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T

EVX1/MA0887.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGCTAATGKCTC
--GNTAATTANN-
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAGCTAATGKCTC
---NTAATKGTTT
 T A G C C G T A A C T G A T G C A C G T C G T A C G T A A C G T A T C G A C T G A G T C A G C T A T G C
A C G T A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T