Information for 6-TGRAAAATGA (Motif 4)

A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A
Reverse Opposite:
A G C T A G T C C G T A G C A T A C G T A C G T C G A T G A T C G T A C C G T A
p-value:1e-20
log p-value:-4.767e+01
Information Content per bp:1.742
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif6.53%
Number of Background Sequences with motif638.3
Percentage of Background Sequences with motif1.40%
Average Position of motif in Targets51.1 +/- 21.5bp
Average Position of motif in Background48.6 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TGRAAAATGA---
-GWAAYHTGABMC
 A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A A C G T A C G T A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGRAAAATGA
AATGGAAAAT--
 A C G T A C G T A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGRAAAATGA
NATGGAAAAN--
 A C G T A C G T A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGRAAAATGA
TGGAAAA---
 A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGRAAAATGA---
-GWAAYHTGAKMC
 A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A A C G T A C G T A C G T
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

NFATC3/MA0625.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGRAAAATGA
AATGGAAAAT--
 A C G T A C G T A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGRAAAATGA
NNTGGAAANN--
 A C G T A C G T A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGRAAAATGA
TGATTGATGA
 A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TGRAAAATGA-
-----CATGAC
 A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGRAAAATGA--
TGATTRATGGCY
 A C G T A C T G C T A G C G T A T G C A T G C A C G T A C G A T A C T G C T G A A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C