Information for 2-RAYGGCCACTAGGKGG (Motif 3)

T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G
Reverse Opposite:
T G A C G T A C G T C A A G T C A G T C A C G T C G T A A T C G C G A T C T A G A C T G A G T C T A G C T C A G A C G T A G C T
p-value:1e-33
log p-value:-7.711e+01
Information Content per bp:1.661
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.9 +/- 21.1bp
Average Position of motif in Background58.6 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)2.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:forward strand
Alignment:RAYGGCCACTAGGKGG-----
--TGGCCACCAGGGGGCGCTA
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:RAYGGCCACTAGGKGG------
--TGGCCACCAGGTGGCACTNT
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.80
Offset:4
Orientation:reverse strand
Alignment:RAYGGCCACTAGGKGG--------
----GCCASCAGGGGGCGCYVNNG
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0128.1_Gcm1_2/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RAYGGCCACTAGGKGG----
---TGCGCATAGGGGAGGAG
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:5
Score:0.54
Offset:8
Orientation:forward strand
Alignment:RAYGGCCACTAGGKGG--
--------GGAGGGGGAA
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:RAYGGCCACTAGGKGG-
---CACCCCCGGGGGGG
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:RAYGGCCACTAGGKGG
---AGCCAATCGG---
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T

Znf423/MA0116.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:RAYGGCCACTAGGKGG-
--GCACCCCTGGGTGCC
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G A C G T
A C G T A C G T A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--RAYGGCCACTAGGKGG
CATAAGACCACCATTAC-
 A C G T A C G T T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:RAYGGCCACTAGGKGG--
---NCCCCCCCGGGGGGN
 T C G A T G C A A G T C A C T G T C A G A G T C A G T C C G T A A T G C G C A T G T C A C T A G C T A G A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G