Information for 13-AGACAGTGAC (Motif 23)

C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C
Reverse Opposite:
C T A G A G C T A G T C C G T A G T A C C G A T A T C G G C A T A G T C A C G T
p-value:1e-9
log p-value:-2.271e+01
Information Content per bp:1.826
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.25%
Number of Background Sequences with motif160.6
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets39.9 +/- 27.4bp
Average Position of motif in Background51.5 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AGACAGTGAC-
---NCGTGACN
 C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C A C G T
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGTGAC
CCAGACAG----
 A C G T A C G T C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AGACAGTGAC--
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGACAGTGAC
-GACAATGNN
 C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGACAGTGAC
AAAACAATGG-
 A C G T C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGACAGTGAC---
AGGTCANTGACCTN
 A C G T C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C A C G T A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGACAGTGAC
TCAGNGAGCGTGAC
 A C G T A C G T A C G T A C G T C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGTGAC
BCAGACWA----
 A C G T A C G T C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------AGACAGTGAC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGACAGTGAC
RAACAATGGN
 C G T A T C A G C G T A T A G C C G T A C A T G C G A T C T A G C T G A A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C