Information for 9-CGCACTAATG (Motif 12)

G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G
Reverse Opposite:
G T A C G C T A A C G T A G C T T C G A A T C G A C G T C T A G A T G C C A T G
p-value:1e-12
log p-value:-2.898e+01
Information Content per bp:1.688
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.60%
Number of Background Sequences with motif325.5
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets50.1 +/- 21.6bp
Average Position of motif in Background48.7 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CGCACTAATG
--CACTAATT
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G
A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CGCACTAATG---
---NNTAATTANN
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CGCACTAATG--
----CTAATKGV
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

PDX1/MA0132.2/Jaspar

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CGCACTAATG--
----CTAATTAN
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A A T G C

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CGCACTAATG--
----NTAATTGN
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

EMX1/MA0612.1/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CGCACTAATG---
---CCTAATTACC
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C A G T C G A C T T C G A C G T A C G A T C A G T C T G A T A G C A G T C

HOXB2/MA0902.1/Jaspar

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCACTAATG---
---NNTAATTANN
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T C G A T C T G A C G T A A G C T A C G T C T G A A T G C A G C T

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CGCACTAATG--
----NTAATTGG
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

EVX2/MA0888.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGCACTAATG---
---NNTAATTANN
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

HOXA2/MA0900.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGCACTAATG---
---GNTAATTANN
 G A T C T A C G G A T C T G C A A T G C A C G T T C G A G T C A C G A T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G