Information for 9-TGCCCGACACGCC (Motif 12)

A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A T C G A C G T A C T G A C G T A G T C A C T G A C T G A C T G A G T C C G T A
p-value:1e-8
log p-value:-1.916e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.2 +/- 3.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TGCCCGACACGCC
GGGTGTGCCCAAAAGG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGCCCGACACGCC
ATGCCCACC-----
 A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGCCCGACACGCC----
--NNGGCCACGCCTTTN
 A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGCCCGACACGCC
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCCGACACGCC--
TCCCAGMCRAGCCCC
 A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TGCCCGACACGCC--
-----GCCMCRCCCH
 A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGCCCGACACGCC
CTGCCCGCA-----
 A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCGACACGCC
ATGCCAGACN----
 A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGCCCGACACGCC
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGCCCGACACGCC--
TGCCTGCGYCMCCTT
 A C G T A C T G A G T C A G T C A G T C A C T G C G T A A G T C G T C A A T G C C T A G A G T C A G T C A C G T A C G T
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T