Information for 2-AGGCCTGRCCYRCCTS (Motif 2)

C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G
Reverse Opposite:
T A G C C G T A A T C G A C T G G A C T C T A G A C T G A C T G A G C T A G T C C G T A A C T G C T A G A G T C A G T C C G A T
p-value:1e-8
log p-value:-1.863e+01
Information Content per bp:1.693
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.68%
Number of Background Sequences with motif36.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets36.6 +/- 20.3bp
Average Position of motif in Background44.7 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:AGGCCTGRCCYRCCTS
-----TGACCTARTT-
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AGGCCTGRCCYRCCTS
-----TGACCT-----
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGCCTGRCCYRCCTS-
--GYCTGGYYTNTGTCA
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G A C G T
A C G T A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGCCTGRCCYRCCTS
AGGCCTNG--------
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGGCCTGRCCYRCCTS
CAAAGGCGTGGCCAG----
 A C G T A C G T A C G T C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGGCCTGRCCYRCCTS-
-NNCNTGACCCCGCTCT
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G A C G T
A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGGCCTGRCCYRCCTS--
----TTGACCTANTTATN
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGGCCTGRCCYRCCTS
-----TGACCTTGAT-
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGCCTGRCCYRCCTS
-TGCCTGCGYCMCCTT
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G
A C G T C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AGGCCTGRCCYRCCTS
-----TGACCTYA---
 C G T A C T A G T A C G A G T C G T A C A C G T A C T G T C G A A G T C G T A C G A C T C T G A A G T C A T G C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T