Information for 1-CCAGAGCCAGACTDGG (Motif 3)

T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
Reverse Opposite:
A G T C G T A C G C T A C G T A A T C G A G C T A G T C A G C T T A C G A C T G A G T C A C G T A G T C A C G T A C T G A C T G
p-value:1e-8
log p-value:-2.069e+01
Information Content per bp:1.773
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.30%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets78.7 +/- 7.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAGCCAGACTDGG
ATGCCAGACN---------
 A C G T A C G T A C G T T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCAGAGCCAGACTDGG
-AGGTGHCAGACA---
 T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCAGAGCCAGACTDGG
-AGGTGNCAGACAG--
 T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCAGAGCCAGACTDGG
-CGGAGC---------
 T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CCAGAGCCAGACTDGG--
-CAAATCCAGACATCACA
 T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CCAGAGCCAGACTDGG
---CAGCC--------
 T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----CCAGAGCCAGACTDGG
NGNTCTAGAACCNGV-----
 A C G T A C G T A C G T A C G T T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:CCAGAGCCAGACTDGG
CCAGACRSVB------
 T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.48
Offset:-9
Orientation:forward strand
Alignment:---------CCAGAGCCAGACTDGG
GAGCCTGGTACTGWGCCTGR-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:CCAGAGCCAGACTDGG
CCAGACAG--------
 T G A C T G A C C G T A A C T G C G T A A C T G G T A C A T G C C T G A C T A G C T G A A T G C C G A T C A G T A C T G C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T