Information for 1-TATCCATGAG (Motif 1)

A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
Reverse Opposite:
A G T C A C G T A T G C C G T A A C G T A C T G A T C G C G T A C G A T C G T A
p-value:1e-10
log p-value:-2.336e+01
Information Content per bp:1.907
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif6.59%
Number of Background Sequences with motif34.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets59.5 +/- 25.3bp
Average Position of motif in Background45.1 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TATCCATGAG
GHATATKCAT---
 A C G T A C G T A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TATCCATGAG
ATGAATATTCATGAG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TATCCATGAG
GAATATTCAT---
 A C G T A C G T A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TATCCATGAG---
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TATCCATGAG
ATTTTCCATT--
 A C G T A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TATCCATGAG
ATTTTCCATT--
 A C G T A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TATCCATGAG
TTATCGATTA-
 A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T

CUX1/MA0754.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TATCCATGAG
NTATCGATTA-
 A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TATCCATGAG
TTCATTTGCATAT-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TATCCATGAG
AAGATATCCTT---
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T G C A G T C C G T A A C G T A T C G C G T A A C T G
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T A C G T