Information for 4-GAGGCTGTGAGTG (Motif 8)

C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G
Reverse Opposite:
A T G C C G T A A G T C A G C T T G A C G T C A A T G C G T C A C T A G A T G C G A T C C G A T A G T C
p-value:1e-9
log p-value:-2.167e+01
Information Content per bp:1.721
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif3.45%
Number of Background Sequences with motif93.2
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets38.0 +/- 24.3bp
Average Position of motif in Background51.7 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAGGCTGTGAGTG
---GCAGTGATTT
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G
A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAGGCTGTGAGTG
--TGCTGTGATTT
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G
A C G T A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGGCTGTGAGTG
---GCTGTG----
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GAGGCTGTGAGTG---
-----CTTGAGTGGCT
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GAGGCTGTGAGTG---
------TTRAGTGSYK
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GAGGCTGTGAGTG---
------TTGAGTGSTT
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GAGGCTGTGAGTG---
------TTAAGTGCTT
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GAGGCTGTGAGTG-----
------BTGABTGACAGS
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GAGGCTGTGAGTG-
--GSCTGTCACTCA
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G A C G T
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GAGGCTGTGAGTG
--NGCTN------
 C T A G C G T A C T A G A T C G A G T C A C G T T A C G A C G T A C T G C T G A C T A G C G A T A T C G
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T