Information for 2-CATCACGATGGCA (Motif 6)

A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A
Reverse Opposite:
A C G T A C T G A T G C A G T C C G T A A C G T G T A C A C T G A C G T A C T G C G T A A C G T A C T G
p-value:1e-10
log p-value:-2.370e+01
Information Content per bp:1.939
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 26.7bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CATCACGATGGCA--
---CAAGATGGCGGC
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CATCACGATGGCA--
---CAAGATGGCGGC
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CATCACGATGGCA-
-----GGTTGGCAT
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CATCACGATGGCA---
--TTGCCATGGCAACN
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CATCACGATGGCA----
-NGTAGGTTGGCATNNN
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CATCACGATGGCA---
--TTGCCATGGCAACC
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CATCACGATGGCA
---AACAAAGG--
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CATCACGATGGCA---
CGTTGCCATGGCAACN
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CATCACGATGGCA---
CGTTGCCATGGCAACG
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CATCACGATGGCA--
------NTTGGCANN
 A G T C C G T A A C G T A G T C C G T A G T A C A C T G C G T A A C G T A C T G A T C G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G