Information for 3-GTGKYTWCTYWSTWMC (Motif 4)

A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
Reverse Opposite:
A C T G C A G T C G A T C G T A A T G C C G A T C T G A C G T A A C T G C G T A C G T A C T A G G T C A A G T C C G T A A G T C
p-value:1e-10
log p-value:-2.497e+01
Information Content per bp:1.804
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 27.6bp
Average Position of motif in Background26.5 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTGKYTWCTYWSTWMC
-TGTTTACTTT-----
 A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTGKYTWCTYWSTWMC
-TGTTTACTTT-----
 A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTGKYTWCTYWSTWMC
NSTGTTTRCWCAGBNNN
 A C G T A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Foxa2/MA0047.2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTGKYTWCTYWSTWMC
-TGTTTACTTAGG---
 A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
A C G T A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GTGKYTWCTYWSTWMC
TCCATGTTTACTTTG----
 A C G T A C G T A C G T A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T A C G T A C G T A C G T

FOXP2/MA0593.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTGKYTWCTYWSTWMC
TNTGTTTACTT------
 A C G T A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
G A C T A G C T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C A T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGKYTWCTYWSTWMC
-TRTTTACTTW-----
 A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A A C G T A C G T A C G T A C G T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTGKYTWCTYWSTWMC
CTTTGTTTACTTTTN---
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
A G T C G C A T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C G A C T A G C T G C A T C G A T C A T G A C G T A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTGKYTWCTYWSTWMC
CNTGTTTACATA-----
 A C G T A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTGKYTWCTYWSTWMC
BSNTGTTTACWYWGN---
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C C G A T C G A T A G T C A C G T A G C T C G T A A T C G A C G T C G T A G T C A A G T C
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G A C G T A C G T A C G T