Information for 1-TGCAMTAATTGAA (Motif 3)

A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
Reverse Opposite:
A C G T G C A T A T G C C G T A C G T A G A C T C G A T C G T A A C G T C A G T A C T G A G T C T G C A
p-value:1e-11
log p-value:-2.542e+01
Information Content per bp:1.734
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif3.10%
Number of Background Sequences with motif43.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets42.9 +/- 25.6bp
Average Position of motif in Background46.2 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGCAMTAATTGAA
---AATAATT---
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:2
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGCAMTAATTGAA
----NTAATTGN-
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
A C G T A C G T A C G T A C G T A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGCAMTAATTGAA
GGCCATAAATCA-
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

MSX2/MA0708.1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGCAMTAATTGAA
----NTAATTGG-
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
A C G T A C G T A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T

MSX1/MA0666.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TGCAMTAATTGAA
----NTAATTGG-
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
A C G T A C G T A C G T A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGCAMTAATTGAA
GGCCATAAATCAC
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

PH0110.1_Nkx1-2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGCAMTAATTGAA----
TGNACTAATTAGTGNAN
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A A C G T A C G T A C G T A C G T
C G A T T A C G G A T C T G C A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A G C T A C T G T G A C G T C A G T A C

Dlx2/MA0885.1/Jaspar

Match Rank:8
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TGCAMTAATTGAA
----NTAATTGN-
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
A C G T A C G T A C G T A C G T C G A T G C A T T G C A C G T A C A G T C A G T C T A G A T G C A C G T

HESX1/MA0894.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGCAMTAATTGAA
---GCTAATTGGC
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
A C G T A C G T A C G T T C A G G A T C C G A T C T G A T C G A A C G T A G C T C T A G T C A G G A T C

ISX/MA0654.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TGCAMTAATTGAA
----NTAATTAG-
 A C G T A C T G G T A C G C T A T G C A A C G T C G T A C G T A G A C T A C G T A T C G C G T A G T C A
A C G T A C G T A C G T A C G T A G C T C G A T G T C A C G T A C A G T C A G T C T G A T C A G A C G T