Information for 7-CGGTGGCAGA (Motif 20)

T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A
Reverse Opposite:
A C G T A G T C A C G T A C T G A T G C A G T C G C T A A T G C A T G C A C T G
p-value:1e-7
log p-value:-1.807e+01
Information Content per bp:1.846
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif242.7
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets41.7 +/- 24.7bp
Average Position of motif in Background52.0 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGGTGGCAGA--
AGGTGHCAGACA
 T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CGGTGGCAGA---
AGGTGNCAGACAG
 T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A A C G T A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGGTGGCAGA
GGTTGGCAT-
 T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

ZBTB7C/MA0695.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGGTGGCAGA
NTCGGTGGTCGC
 A C G T A C G T T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A
A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGGTGGCAGA-
-VBTGWCAGCB
 T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A A C G T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGGTGGCAGA
-CTTGGCAA-
 T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGGTGGCAGA
ANTGCGGGGGCGGN
 A C G T A C G T A C G T A C G T T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGGTGGCAGA--
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

ZBTB7B/MA0694.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGGTGGCAGA
TTCGGTGGTCGC
 A C G T A C G T T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A
C A G T C G A T A G T C C T A G C A T G C A G T A T C G A C T G C A G T G A T C A T C G G A T C

ZBTB7A/MA0750.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGTGGCAGA-
TCGGTGGTCGCN
 A C G T T G A C A T C G A T C G C G A T A C T G A T C G A G T C T G C A A C T G G T C A A C G T
A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C