Information for 2-CCTCAGARGC (Motif 10)

A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C
Reverse Opposite:
T A C G T G A C G A C T A C G T A G T C G A C T A T C G T G C A A C T G T A C G
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.500
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.82%
Number of Background Sequences with motif469.7
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets52.5 +/- 26.9bp
Average Position of motif in Background50.6 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CCTCAGARGC
----NGAAGC
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCTCAGARGC-
NNVVCAGCTGBN
 A C G T A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C A C G T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTCAGARGC-
---CAGCTGNT
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C A C G T
A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCTCAGARGC-
-CGCAGCTGCG
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C A C G T
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTCAGARGC
DCTCAGCAGG
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTCAGARGC
-CACAGN---
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCTCAGARGC---
-CACAGCAGGGGG
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C A C G T A C G T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ETV5/MA0765.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCTCAGARGC-
-ACCGGAAGTG
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C A C G T
A C G T C T G A T A G C T G A C A C T G A C T G G C T A G C T A T C A G A G C T C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTCAGARGC-----
DCHCAGCAGGRGGCC
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTCAGARGC
CAGCAGCTGN
 A T G C T G A C A C G T T A G C C T G A C T A G T G C A C T G A A C T G A T G C
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T