Information for 3-GCCGCGGCTTTTTGCC (Motif 6)

C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C
Reverse Opposite:
C T A G C A T G T A G C T G C A C G T A C T G A C G T A G C T A T C A G A G T C A G T C C T A G T A G C C A T G C T A G G A T C
p-value:1e-14
log p-value:-3.341e+01
Information Content per bp:1.671
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.9 +/- 31.5bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC--
--CTTGGCANNNTGCCAA
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C A C G T A C G T
A C G T A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFATC2/MA0152.1/Jaspar

Match Rank:2
Score:0.53
Offset:10
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC-
----------TTTTCCA
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC
-----GGGGATTTCC-
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C
A C G T A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC
----NGGGGATTTCCC
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C
A C G T A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCCGCGGCTTTTTGCC
GGNGCGNCTGTTNNN-
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GCCGCGGCTTTTTGCC
-----GGGAATTTCC-
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C
A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:7
Score:0.50
Offset:9
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC---
---------ATTTTCCATT
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

NFATC3/MA0625.1/Jaspar

Match Rank:8
Score:0.50
Offset:9
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC---
---------ATTTTCCATT
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GCCGCGGCTTTTTGCC--
----TGGCAGNCTGCCAG
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GCCGCGGCTTTTTGCC
-----GGGAATTTCC-
 C T A G A G T C G T A C A C T G G A T C C T A G A C T G A G T C C G A T C G A T A G C T G A C T A C G T A T C G G T A C G A T C
A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T