Information for 4-GAAAAATCCA (Motif 3)

C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A
Reverse Opposite:
A C G T C T A G A C T G T G C A A G C T A G C T A C G T A C G T A C G T G T A C
p-value:1e-16
log p-value:-3.884e+01
Information Content per bp:1.832
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.72%
Number of Background Sequences with motif121.0
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets36.5 +/- 24.6bp
Average Position of motif in Background51.7 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAAAAATCCA----
GGCAAAAGTCCAATAA
 A C G T A C G T C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

ONECUT3/MA0757.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GAAAAATCCA----
AAAAAATCAATAAT
 C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

ONECUT2/MA0756.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GAAAAATCCA----
AAAAAATCGATAAT
 C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

ONECUT1/MA0679.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAAAAATCCA----
AAAAAATCGATAAT
 C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

PB0146.1_Mafk_2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAAAAATCCA---
GAAAAAATTGCAAGG
 A C G T A C G T C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GAAAAATCCA-
-----ATCCAC
 C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAAAAATCCA----
--SSAATCCACANN
 C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAAAAATCCA
GGAAANCCCC
 C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAAAAATCCA
GGAAATTCCC
 C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GAAAAATCCA---
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T C A T G C G T A C G T A T G C A T C G A T C G A A C G T A G T C A G T C C G T A A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C