Information for 12-AGGGTATCCA (Motif 22)

C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G C T G A A G C T C G T A A G T C A G T C A G T C A C G T
p-value:1e-6
log p-value:-1.452e+01
Information Content per bp:1.939
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif23.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets45.4 +/- 21.1bp
Average Position of motif in Background50.1 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0166.1_Six6_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGGGTATCCA----
AATAGGGTATCAATATT
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGGGTATCCA-----
NTNNCGTATCCAAGTNN
 A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

PB0059.1_Six6_1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AGGGTATCCA----
AATAGGGTATCATATAT
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PH0165.1_Six6_1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AGGGTATCCA----
AATAGGGTATCAATTAT
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

Six3/MA0631.1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AGGGTATCCA----
GATAGGGTATCACTAAT
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AGGGTATCCA----
GATAGGGTATCACTAAT
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0161.1_Six1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGGGTATCCA----
GATGGGGTATCATTTTT
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGGGTATCCA-----
NNNGTAACTANGNNA
 C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PH0162.1_Six2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGGTATCCA----
AATGGGGTATCACGTTT
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AGGGTATCCA---------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C T G A C G T C T G A A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T