Information for 2-CCRCCAGGGGGCR (Motif 4)

A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G
Reverse Opposite:
A G T C T C A G A G T C A G T C T G A C G A T C A T G C C A G T C A T G A T C G G A T C C A T G A C T G
p-value:1e-13
log p-value:-3.125e+01
Information Content per bp:1.635
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif6.62%
Number of Background Sequences with motif963.7
Percentage of Background Sequences with motif1.99%
Average Position of motif in Targets52.8 +/- 24.2bp
Average Position of motif in Background48.4 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CCRCCAGGGGGCR------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CCRCCAGGGGGCR---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---CCRCCAGGGGGCR----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCRCCAGGGGGCR
CCCCCCCGGGGGNN
 A C G T A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCRCCAGGGGGCR
NCCCCCCCGGGGGGN
 A C G T A C G T A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCRCCAGGGGGCR
ACCCCCCCGGGGGGN
 A C G T A C G T A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCRCCAGGGGGCR-
CCGCCCAAGGGCAG
 A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G A C G T
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCRCCAGGGGGCR
--AACAGATGGC-
 A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCRCCAGGGGGCR
-TGCCCNGGGGCA
 A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G
A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCRCCAGGGGGCR-----
-NNNAAGGGGGCGGGNNN
 A G T C G T A C C T A G T A G C G T A C G T C A T A C G C T A G A C T G C T A G T C A G A G T C T C A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C