Information for 6-TAAAGGCAGA (Motif 15)

G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A
Reverse Opposite:
C G A T A G T C A C G T A T C G G T A C A G T C A G C T G A C T C G A T C T G A
p-value:1e-9
log p-value:-2.178e+01
Information Content per bp:1.832
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif152.2
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets55.1 +/- 24.5bp
Average Position of motif in Background47.9 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TAAAGGCAGA
TNNGGGCAG-
 G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TAAAGGCAGA--
--ATGCCAGACN
 G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TAAAGGCAGA-
TAATGGCGGNC
 G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A A C G T
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TAAAGGCAGA
AAAAGTCAA-
 G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TAAAGGCAGA-----
-----CCAGACRSVB
 G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TAAAGGCAGA---
--AAGGCAAGTGT
 G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TAAAGGCAGA
CTAATKGV---
 A C G T G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TAAAGGCAGA-
-AGAGGAAGTG
 G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A A C G T
A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

BARHL2/MA0635.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TAAAGGCAGA
GCTAAACGGT--
 A C G T A C G T G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TAAAGGCAGA-
-ATATGCAAAT
 G A C T G C T A C T G A C T G A A C T G A C T G A T G C G T C A C T A G C G T A A C G T
A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T