Information for 3-CTGCCHATCAACA (Motif 6)

A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T A C G T C T A G G T C A A G C T C G T A A C T G A C T G A G T C C G T A A C T G
p-value:1e-8
log p-value:-1.997e+01
Information Content per bp:1.867
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif29.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets65.3 +/- 24.6bp
Average Position of motif in Background56.6 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGCCHATCAACA
SCTGTCAVTCAV--
 A C G T A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGCCHATCAACA
NCTGTCAATCAN--
 A C G T A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTGCCHATCAACA
TGTTKCCTAGCAACM
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTGCCHATCAACA-
--SCCTAGCAACAG
 A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTGCCHATCAACA--
---SSAATCCACANN
 A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

FOXH1/MA0479.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGCCHATCAACA
--TCCAATCCACA
 A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A
A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGCCHATCAACA
GSCTGTCACTCA---
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGCCHATCAACA--
---SCTGTCARCACC
 A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGCCHATCAACA
CTGCCCGCA----
 A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGCCHATCAACA
ATGCCCACC----
 A G T C A C G T A C T G A G T C A G T C G C A T T C G A A C G T A G T C G T C A C G T A A T G C C G T A
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T