Information for 1-CCTSCTGGKYCCTGCA (Motif 1)

G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A
Reverse Opposite:
A C G T C A T G A G T C C G T A A C T G A T C G C T A G G T A C G T A C A G T C C G T A A C T G A T G C C T G A A C T G C T A G
p-value:1e-11
log p-value:-2.701e+01
Information Content per bp:1.732
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.6 +/- 27.3bp
Average Position of motif in Background59.8 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CCTSCTGGKYCCTGCA
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A C G T G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTSCTGGKYCCTGCA
CCCCCTGCTGTG-------
 A C G T A C G T A C G T G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCTSCTGGKYCCTGCA---
GCMTBCTGGGAGTTGTAGTY
 A C G T G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A A C G T A C G T A C G T
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CCTSCTGGKYCCTGCA
GGCCYCCTGCTGDGH------
 A C G T A C G T A C G T A C G T A C G T G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CCTSCTGGKYCCTGCA---
GCATTCTGGGAATTGTAGTT
 A C G T G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A A C G T A C G T A C G T
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCTSCTGGKYCCTGCA
CCTGCTGAGH------
 G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:7
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CCTSCTGGKYCCTGCA--
-------GTACCCGCATN
 G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CCTSCTGGKYCCTGCA
TCNCCTGCTGNGNNN----
 A C G T A C G T A C G T G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CCTSCTGGKYCCTGCA
TNTCCTGCTGTGNNG----
 A C G T A C G T A C G T G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CCTSCTGGKYCCTGCA-----
----AATCGCACTGCATTCCG
 G A T C G T A C A G C T A T C G A G T C G C A T C T A G A C T G A C T G G A T C A T G C A G T C C G A T A C T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G