Information for 1-CAATCMTRRKGCTTMK (Motif 1)

A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
Reverse Opposite:
G T C A C A T G C G T A C G T A C T A G A G T C G T A C A G T C A G C T C G T A A C G T A C T G C G T A C G A T A C G T A C T G
p-value:1e-15
log p-value:-3.473e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.8 +/- 26.1bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAATCMTRRKGCTTMK
CCAATCAA---------
 A C G T A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAATCMTRRKGCTTMK
ACTYKNATTCGTGNTACTTC-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CAATCMTRRKGCTTMK
TGGACCAATCAGCACTCT---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CAATCMTRRKGCTTMK
CCATCAATCAAA--------
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAATCMTRRKGCTTMK
CAAATCACTG-------
 A C G T A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAATCMTRRKGCTTMK
AACAATGGTAGTGTT---
 A C G T A C G T A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.50
Offset:10
Orientation:forward strand
Alignment:CAATCMTRRKGCTTMK
----------GCTTCC
 A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CAATCMTRRKGCTTMK
GYCATCMATCAT---------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:9
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CAATCMTRRKGCTTMK
AACAATGNTATTGTT---
 A C G T A C G T A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CAATCMTRRKGCTTMK
--NGCCTNAGGCN---
 A G T C C G T A C G T A A C G T A G T C G T C A A C G T C T G A C T A G A C T G A C T G A G T C A C G T A C G T G T A C A C G T
A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T