Information for 5-GCAATTCAAATCT (Motif 6)

A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
Reverse Opposite:
C T G A C A T G C T G A C G A T A C G T C G A T C T A G G T C A G T C A A C G T A G C T A C T G A T G C
p-value:1e-13
log p-value:-3.040e+01
Information Content per bp:1.749
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.0 +/- 22.6bp
Average Position of motif in Background36.1 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCAATTCAAATCT
--NATTCAAAT--
 A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCAATTCAAATCT
GCAATAAAAA---
 A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCAATTCAAATCT-
AATCAATTCAATAATT
 A C G T A C G T A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCAATTCAAATCT
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAATTCAAATCT
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAATTCAAATCT
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAATTCAAATCT
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAATTCAAATCT
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCAATTCAAATCT
--TATGCAAAT--
 A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAATTCAAATCT
NGCAATTAAA----
 A C G T A T C G A G T C T C G A C G T A A C G T A C G T G A T C C G T A C G T A C G T A G A C T G A T C A G C T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T