Information for 7-AGAGACATGCCAGGSV (Motif 7)

G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
Reverse Opposite:
A T C G A T G C A T G C A G T C C G A T C T A G C A T G G T A C G C T A C G A T T A C G C G A T A G T C A G C T T A G C C A G T
p-value:1e-14
log p-value:-3.406e+01
Information Content per bp:1.621
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.26%
Number of Background Sequences with motif169.2
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets54.8 +/- 24.6bp
Average Position of motif in Background47.2 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGAGACATGCCAGGSV
TGACANARRCCAGRC-
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AGAGACATGCCAGGSV--
----ACATGCCCGGGCAT
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:AGAGACATGCCAGGSV
------ATGCCAGACN
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGAGACATGCCAGGSV
--NNACTTGCCTT---
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.61
Offset:6
Orientation:forward strand
Alignment:AGAGACATGCCAGGSV
------TTGCCAAG--
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AGAGACATGCCAGGSV
-----CGTGCCAAG--
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.59
Offset:6
Orientation:forward strand
Alignment:AGAGACATGCCAGGSV
------TTGACAGC--
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:AGAGACATGCCAGGSV
-------TGCCAA---
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGAGACATGCCAGGSV
----RCATTCCWGG--
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
A C G T A C G T A C G T A C G T C T G A T G A C C T G A A C G T C G A T A G T C A G T C G C T A C T A G T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGAGACATGCCAGGSV
------ATGCCAACC-
 G T C A A T C G C T G A T C A G G C T A A T G C G C T A C G A T C A T G G A T C A G T C C G T A A C T G T A C G A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T