Information for 11-GGTCTGCCAG (Motif 36)

A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C A G T C
p-value:1e-5
log p-value:-1.218e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.7 +/- 17.8bp
Average Position of motif in Background43.5 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGTCTGCCAG--
TGTCTGDCACCT
 A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GGTCTGCCAG-
---TTGCCAAG
 A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGTCTGCCAG
GGTCTGGCAT
 A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGCCAG--
CTGTCTGTCACCT
 A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GGTCTGCCAG
----TGCCAA
 A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGTCTGCCAG
VBSYGTCTGG---
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGTCTGCCAG-
--CGTGCCAAG
 A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGTCTGCCAG-
-VGCTGWCAVB
 A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGCCAG
CTGTCTGG---
 A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGTCTGCCAG--
---CTGCCCGCA
 A C T G A C T G A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A