Information for 18-MAAKCAWGATTTR (Motif 33)

G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A
Reverse Opposite:
A G C T G T C A C G T A C G T A A C G T A G T C C G T A A C G T A C T G G T C A A C G T A C G T A C G T
p-value:1e-6
log p-value:-1.425e+01
Information Content per bp:1.873
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.0 +/- 6.4bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:MAAKCAWGATTTR---
-TATCATAATTAAGGA
 G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A A C G T A C G T A C G T
A C G T C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:MAAKCAWGATTTR-----
-----NTGATTTATGGCC
 G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-MAAKCAWGATTTR
CCAATCAA------
 A C G T G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:MAAKCAWGATTTR-----
------TGATTTATGGCC
 G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:MAAKCAWGATTTR
---CNGTGATTTN
 G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A
A C G T A C G T A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:MAAKCAWGATTTR-----
-TNNNATGATTTCNNCNN
 G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:MAAKCAWGATTTR----
------TGATTTATGGC
 G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:MAAKCAWGATTTR-----
------TGATTTATGGCC
 G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--MAAKCAWGATTTR
TTCACGCATGAGTT-
 A C G T A C G T G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:MAAKCAWGATTTR
--ANCAGGATGT-
 G T C A C G T A C G T A A C G T A G T C C G T A C G A T A C T G C G T A A C G T A C G T A C G T T C G A
A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T