Information for 11-AAMCACAAAAATMCAT (Motif 11)

T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
Reverse Opposite:
C T G A C G A T C T A G C A G T T C G A A G C T A G C T G C A T A C G T A C G T T A C G A C G T A C T G A C G T A C G T A G C T
p-value:1e-12
log p-value:-2.971e+01
Information Content per bp:1.651
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif60.1
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets45.6 +/- 22.6bp
Average Position of motif in Background47.2 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AAMCACAAAAATMCAT-
AGTAAACAAAAAAGAACANN
 A C G T A C G T A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T A C G T
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAMCACAAAAATMCAT
AAACCACANN-------
 A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAMCACAAAAATMCAT
NWAACCACADNN------
 A C G T A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAMCACAAAAATMCAT
AAACCGCAAA-------
 A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAMCACAAAAATMCAT
NAAACCACAG--------
 A C G T A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAMCACAAAAATMCAT
CAAACAACAACACCT---
 A C G T A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAMCACAAAAATMCAT
AAACCACAGAN------
 A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAMCACAAAAATMCAT
AAACCACAGC-------
 A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAMCACAAAAATMCAT
-AAAACAAAGG-----
 T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AAMCACAAAAATMCAT
AACAAACAACAAGAG----
 A C G T A C G T A C G T T C G A C G T A G T C A T G A C C G T A A T G C G T C A C G T A C G T A C T G A C T G A A G C T G T C A A G T C G C T A A G C T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T A C G T A C G T A C G T