Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 788)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47763)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-77	-1.794e+02	0.0000	76.0	9.64%	181.5	0.38%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-71	-1.638e+02	0.0000	70.0	8.88%	170.4	0.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-71	-1.638e+02	0.0000	70.0	8.88%	170.4	0.36%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-62	-1.444e+02	0.0000	69.0	8.76%	217.4	0.46%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-52	-1.215e+02	0.0000	90.0	11.42%	632.0	1.33%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-51	-1.180e+02	0.0000	45.0	5.71%	82.6	0.17%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-45	-1.054e+02	0.0000	119.0	15.10%	1443.4	3.03%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-45	-1.051e+02	0.0000	110.0	13.96%	1223.1	2.57%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-45	-1.048e+02	0.0000	162.0	20.56%	2690.9	5.64%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-45	-1.047e+02	0.0000	111.0	14.09%	1252.9	2.63%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-44	-1.023e+02	0.0000	130.0	16.50%	1786.5	3.75%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-43	-9.952e+01	0.0000	100.0	12.69%	1057.9	2.22%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-41	-9.555e+01	0.0000	81.0	10.28%	688.2	1.44%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-41	-9.463e+01	0.0000	115.0	14.59%	1503.8	3.15%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-40	-9.314e+01	0.0000	69.0	8.76%	483.9	1.01%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-36	-8.417e+01	0.0000	130.0	16.50%	2132.7	4.47%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-35	-8.246e+01	0.0000	115.0	14.59%	1717.0	3.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-33	-7.760e+01	0.0000	113.0	14.34%	1752.2	3.67%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-17	-3.941e+01	0.0000	13.0	1.65%	17.0	0.04%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-15	-3.647e+01	0.0000	38.0	4.82%	423.5	0.89%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-7	-1.656e+01	0.0000	68.0	8.63%	2041.1	4.28%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.355e+01	0.0000	52.0	6.60%	1528.8	3.21%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-4	-1.121e+01	0.0002	82.0	10.41%	3050.1	6.40%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-4	-1.055e+01	0.0004	14.0	1.78%	220.7	0.46%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-4	-9.692e+00	0.0009	50.0	6.35%	1675.9	3.51%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-7.932e+00	0.0050	8.0	1.02%	103.0	0.22%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.664e+00	0.0063	52.0	6.60%	1924.1	4.04%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-3	-7.499e+00	0.0072	37.0	4.70%	1241.8	2.60%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-6.757e+00	0.0146	23.0	2.92%	676.7	1.42%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-6.421e+00	0.0197	22.0	2.79%	652.1	1.37%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-2	-6.375e+00	0.0200	12.0	1.52%	262.3	0.55%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-6.162e+00	0.0240	24.0	3.05%	752.2	1.58%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-6.122e+00	0.0242	21.0	2.66%	626.0	1.31%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-6.065e+00	0.0249	17.0	2.16%	464.7	0.97%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.875e+00	0.0292	7.0	0.89%	111.5	0.23%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-5.809e+00	0.0303	61.0	7.74%	2554.9	5.36%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.759e+00	0.0310	15.0	1.90%	398.6	0.84%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.740e+00	0.0310	51.0	6.47%	2059.8	4.32%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.636e+00	0.0333	79.0	10.03%	3506.2	7.35%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-5.623e+00	0.0333	36.0	4.57%	1339.7	2.81%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.590e+00	0.0333	7.0	0.89%	117.6	0.25%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-5.516e+00	0.0348	22.0	2.79%	704.9	1.48%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-5.282e+00	0.0430	28.0	3.55%	991.1	2.08%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-5.079e+00	0.0515	215.0	27.28%	11156.0	23.40%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-4.955e+00	0.0570	232.0	29.44%	12166.8	25.52%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-4.650e+00	0.0756	43.0	5.46%	1779.0	3.73%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-4.372e+00	0.0978	46.0	5.84%	1963.1	4.12%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-4.324e+00	0.1004	17.0	2.16%	558.8	1.17%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-4.322e+00	0.1004	45.0	5.71%	1918.2	4.02%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-4.283e+00	0.1004	8.0	1.02%	187.7	0.39%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.273e+00	0.1004	64.0	8.12%	2915.8	6.12%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-4.182e+00	0.1068	6.0	0.76%	119.5	0.25%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-4.134e+00	0.1100	51.0	6.47%	2253.0	4.73%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-4.047e+00	0.1178	20.0	2.54%	714.4	1.50%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-4.022e+00	0.1186	32.0	4.06%	1296.1	2.72%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-3.983e+00	0.1211	38.0	4.82%	1602.6	3.36%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.957e+00	0.1220	46.0	5.84%	2016.8	4.23%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.875e+00	0.1302	83.0	10.53%	4006.3	8.40%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.843e+00	0.1322	13.0	1.65%	411.1	0.86%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-3.800e+00	0.1358	36.0	4.57%	1522.7	3.19%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.783e+00	0.1358	12.0	1.52%	371.2	0.78%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.705e+00	0.1444	44.0	5.58%	1946.6	4.08%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.690e+00	0.1444	18.0	2.28%	648.0	1.36%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-3.536e+00	0.1656	17.0	2.16%	613.7	1.29%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-3.527e+00	0.1656	49.0	6.22%	2234.0	4.69%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.520e+00	0.1656	132.0	16.75%	6817.4	14.30%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.409e+00	0.1797	24.0	3.05%	962.7	2.02%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.377e+00	0.1827	34.0	4.31%	1471.7	3.09%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-3.350e+00	0.1851	33.0	4.19%	1423.8	2.99%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.291e+00	0.1935	16.0	2.03%	585.4	1.23%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-3.285e+00	0.1935	3.0	0.38%	44.2	0.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-3.252e+00	0.1957	4.0	0.51%	76.4	0.16%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.189e+00	0.2055	47.0	5.96%	2180.7	4.57%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.156e+00	0.2095	5.0	0.63%	114.9	0.24%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.130e+00	0.2122	10.0	1.27%	321.5	0.67%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.124e+00	0.2122	38.0	4.82%	1713.1	3.59%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.076e+00	0.2180	18.0	2.28%	699.4	1.47%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.061e+00	0.2187	78.0	9.90%	3895.8	8.17%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.038e+00	0.2208	48.0	6.09%	2258.1	4.74%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.015e+00	0.2233	45.0	5.71%	2101.6	4.41%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-3.013e+00	0.2233	35.0	4.44%	1571.1	3.30%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.012e+00	0.2233	10.0	1.27%	329.0	0.69%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.992e+00	0.2233	71.0	9.01%	3522.2	7.39%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.964e+00	0.2238	35.0	4.44%	1578.1	3.31%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.960e+00	0.2238	28.0	3.55%	1214.0	2.55%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.956e+00	0.2238	2.0	0.25%	22.7	0.05%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.925e+00	0.2245	20.0	2.54%	812.1	1.70%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.891e+00	0.2296	37.0	4.70%	1694.8	3.55%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.873e+00	0.2313	35.0	4.44%	1591.3	3.34%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.849e+00	0.2342	55.0	6.98%	2671.2	5.60%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.791e+00	0.2454	6.0	0.76%	167.8	0.35%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.753e+00	0.2522	9.0	1.14%	299.1	0.63%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.686e+00	0.2667	23.0	2.92%	990.7	2.08%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.683e+00	0.2667	15.0	1.90%	588.3	1.23%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.671e+00	0.2667	35.0	4.44%	1621.2	3.40%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-2.603e+00	0.2808	29.0	3.68%	1314.0	2.76%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-2.597e+00	0.2808	53.0	6.73%	2611.0	5.48%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.408e+00	0.3341	26.0	3.30%	1182.8	2.48%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.407e+00	0.3341	43.0	5.46%	2098.8	4.40%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.388e+00	0.3342	31.0	3.93%	1451.3	3.04%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.373e+00	0.3358	45.0	5.71%	2214.1	4.64%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.358e+00	0.3375	51.0	6.47%	2548.7	5.35%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.356e+00	0.3375	56.0	7.11%	2826.9	5.93%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.288e+00	0.3553	40.0	5.08%	1956.1	4.10%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.266e+00	0.3596	71.0	9.01%	3689.5	7.74%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.257e+00	0.3596	36.0	4.57%	1743.7	3.66%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.228e+00	0.3665	28.0	3.55%	1315.4	2.76%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.217e+00	0.3670	23.0	2.92%	1050.8	2.20%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.214e+00	0.3670	29.0	3.68%	1371.4	2.88%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.090e+00	0.4091	46.0	5.84%	2327.8	4.88%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.003e+00	0.4425	32.0	4.06%	1570.5	3.29%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.908e+00	0.4821	12.0	1.52%	513.1	1.08%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.905e+00	0.4821	13.0	1.65%	565.8	1.19%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.902e+00	0.4821	20.0	2.54%	935.4	1.96%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.895e+00	0.4821	20.0	2.54%	936.3	1.96%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.889e+00	0.4821	7.0	0.89%	264.9	0.56%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.870e+00	0.4821	48.0	6.09%	2489.9	5.22%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.849e+00	0.4856	16.0	2.03%	729.7	1.53%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.827e+00	0.4882	4.0	0.51%	127.4	0.27%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.827e+00	0.4882	4.0	0.51%	127.8	0.27%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.816e+00	0.4896	6.0	0.76%	221.9	0.47%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.804e+00	0.4913	43.0	5.46%	2223.2	4.66%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.800e+00	0.4913	20.0	2.54%	951.0	1.99%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.783e+00	0.4938	30.0	3.81%	1501.8	3.15%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.772e+00	0.4950	91.0	11.55%	4981.2	10.45%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.734e+00	0.5099	11.0	1.40%	480.5	1.01%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.713e+00	0.5170	9.0	1.14%	379.3	0.80%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.685e+00	0.5274	20.0	2.54%	968.3	2.03%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.685e+00	0.5274	44.0	5.58%	2308.3	4.84%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.684e+00	0.5274	13.0	1.65%	591.4	1.24%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.676e+00	0.5274	13.0	1.65%	592.3	1.24%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.671e+00	0.5274	21.0	2.66%	1025.4	2.15%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.619e+00	0.5420	84.0	10.66%	4628.5	9.71%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.596e+00	0.5507	5.0	0.63%	189.0	0.40%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.594e+00	0.5507	38.0	4.82%	1990.8	4.18%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.587e+00	0.5507	10.0	1.27%	444.9	0.93%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.579e+00	0.5507	27.0	3.43%	1374.4	2.88%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.577e+00	0.5507	1.0	0.13%	14.9	0.03%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.528e+00	0.5683	9.0	1.14%	398.9	0.84%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.526e+00	0.5683	10.0	1.27%	451.2	0.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.500e+00	0.5718	12.0	1.52%	561.5	1.18%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.500e+00	0.5718	12.0	1.52%	561.6	1.18%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.449e+00	0.5975	39.0	4.95%	2083.5	4.37%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.407e+00	0.6187	15.0	1.90%	738.2	1.55%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.379e+00	0.6323	86.0	10.91%	4835.4	10.14%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.372e+00	0.6324	69.0	8.76%	3843.8	8.06%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.371e+00	0.6324	37.0	4.70%	1989.2	4.17%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.342e+00	0.6425	33.0	4.19%	1767.3	3.71%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.330e+00	0.6463	35.0	4.44%	1885.9	3.96%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.325e+00	0.6463	5.0	0.63%	209.0	0.44%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.323e+00	0.6463	71.0	9.01%	3978.1	8.34%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.311e+00	0.6463	1.0	0.13%	19.7	0.04%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.310e+00	0.6463	19.0	2.41%	978.7	2.05%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.295e+00	0.6476	19.0	2.41%	981.6	2.06%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.271e+00	0.6587	73.0	9.26%	4115.8	8.63%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.263e+00	0.6598	51.0	6.47%	2831.1	5.94%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.253e+00	0.6623	31.0	3.93%	1676.0	3.52%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.239e+00	0.6674	25.0	3.17%	1334.9	2.80%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.214e+00	0.6800	52.0	6.60%	2906.6	6.10%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.212e+00	0.6800	87.0	11.04%	4964.1	10.41%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.206e+00	0.6800	93.0	11.80%	5321.3	11.16%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.203e+00	0.6800	223.0	28.30%	13069.5	27.41%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.180e+00	0.6864	6.0	0.76%	276.3	0.58%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.175e+00	0.6864	9.0	1.14%	441.2	0.93%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.159e+00	0.6923	4.0	0.51%	171.1	0.36%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.125e+00	0.7116	86.0	10.91%	4944.8	10.37%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.117e+00	0.7136	23.0	2.92%	1248.9	2.62%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.116e+00	0.7136	6.0	0.76%	283.0	0.59%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.090e+00	0.7244	39.0	4.95%	2187.1	4.59%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.087e+00	0.7244	30.0	3.81%	1662.6	3.49%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.075e+00	0.7263	16.0	2.03%	854.8	1.79%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.064e+00	0.7306	5.0	0.63%	234.8	0.49%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.053e+00	0.7337	15.0	1.90%	801.7	1.68%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.028e+00	0.7480	26.0	3.30%	1445.4	3.03%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-9.931e-01	0.7705	97.0	12.31%	5664.5	11.88%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-9.669e-01	0.7865	170.0	21.57%	10050.7	21.08%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-9.656e-01	0.7865	10.0	1.27%	530.3	1.11%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-9.487e-01	0.7919	5.0	0.63%	247.5	0.52%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-9.449e-01	0.7919	48.0	6.09%	2770.6	5.81%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-9.441e-01	0.7919	47.0	5.96%	2711.8	5.69%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-9.321e-01	0.7919	62.0	7.87%	3608.8	7.57%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-9.200e-01	0.7971	33.0	4.19%	1890.6	3.97%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.175e-01	0.7971	27.0	3.43%	1536.3	3.22%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-8.801e-01	0.8205	31.0	3.93%	1785.2	3.74%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.746e-01	0.8205	15.0	1.90%	840.2	1.76%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-8.599e-01	0.8282	20.0	2.54%	1139.4	2.39%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-8.565e-01	0.8282	4.0	0.51%	201.2	0.42%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.456e-01	0.8312	62.0	7.87%	3649.6	7.65%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.340e-01	0.8364	51.0	6.47%	2996.5	6.28%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-8.329e-01	0.8364	21.0	2.66%	1206.2	2.53%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-8.276e-01	0.8364	29.0	3.68%	1684.6	3.53%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-8.225e-01	0.8364	1.0	0.13%	35.9	0.08%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.216e-01	0.8364	11.0	1.40%	616.6	1.29%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-8.169e-01	0.8364	11.0	1.40%	617.9	1.30%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.154e-01	0.8364	3.0	0.38%	148.0	0.31%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.135e-01	0.8364	94.0	11.93%	5587.2	11.72%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.094e-01	0.8364	5.0	0.63%	265.1	0.56%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.824e-01	0.8407	12.0	1.52%	684.0	1.43%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.804e-01	0.8407	16.0	2.03%	923.8	1.94%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.609e-01	0.8504	32.0	4.06%	1888.5	3.96%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.522e-01	0.8536	8.0	1.02%	452.5	0.95%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.520e-01	0.8536	36.0	4.57%	2132.4	4.47%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.442e-01	0.8536	4.0	0.51%	215.5	0.45%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.417e-01	0.8536	2.0	0.25%	97.4	0.20%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-7.260e-01	0.8591	1.0	0.13%	40.1	0.08%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.078e-01	0.8706	4.0	0.51%	220.7	0.46%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.829e-01	0.8882	61.0	7.74%	3675.7	7.71%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.804e-01	0.8882	17.0	2.16%	1012.2	2.12%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.768e-01	0.8882	60.0	7.61%	3618.2	7.59%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.760e-01	0.8882	18.0	2.28%	1074.8	2.25%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.655e-01	0.8882	29.0	3.68%	1745.1	3.66%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.532e-01	0.8935	4.0	0.51%	228.1	0.48%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-6.447e-01	0.8969	1.0	0.13%	45.2	0.09%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.363e-01	0.9002	3.0	0.38%	169.2	0.35%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.294e-01	0.9023	2.0	0.25%	108.1	0.23%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-6.183e-01	0.9081	29.0	3.68%	1765.6	3.70%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.119e-01	0.9097	21.0	2.66%	1279.7	2.68%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.067e-01	0.9103	17.0	2.16%	1037.0	2.17%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.021e-01	0.9103	2.0	0.25%	111.3	0.23%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.912e-01	0.9161	11.0	1.40%	672.3	1.41%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.847e-01	0.9178	2.0	0.25%	113.8	0.24%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.713e-01	0.9260	15.0	1.90%	925.9	1.94%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-5.645e-01	0.9282	26.0	3.30%	1605.1	3.37%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.594e-01	0.9288	3.0	0.38%	180.9	0.38%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.566e-01	0.9288	11.0	1.40%	682.6	1.43%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.528e-01	0.9288	3.0	0.38%	181.1	0.38%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.439e-01	0.9308	169.0	21.45%	10343.7	21.69%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.406e-01	0.9308	22.0	2.79%	1369.9	2.87%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.384e-01	0.9308	6.0	0.76%	374.4	0.79%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.319e-01	0.9308	18.0	2.28%	1126.0	2.36%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.154e-01	0.9411	3.0	0.38%	187.5	0.39%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.056e-01	0.9463	2.0	0.25%	123.3	0.26%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-5.043e-01	0.9463	12.0	1.52%	761.3	1.60%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-5.010e-01	0.9463	80.0	10.15%	4957.6	10.40%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.996e-01	0.9463	14.0	1.78%	888.5	1.86%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.987e-01	0.9463	10.0	1.27%	637.8	1.34%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.977e-01	0.9463	3.0	0.38%	190.8	0.40%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.933e-01	0.9463	15.0	1.90%	953.7	2.00%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.848e-01	0.9463	9.0	1.14%	578.3	1.21%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.848e-01	0.9463	118.0	14.97%	7296.9	15.30%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.805e-01	0.9463	80.0	10.15%	4974.9	10.43%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.675e-01	0.9463	13.0	1.65%	837.8	1.76%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.571e-01	0.9483	2.0	0.25%	130.1	0.27%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.545e-01	0.9483	4.0	0.51%	264.7	0.56%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.480e-01	0.9492	3.0	0.38%	199.5	0.42%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-4.380e-01	0.9549	41.0	5.20%	2602.9	5.46%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.350e-01	0.9549	30.0	3.81%	1919.1	4.02%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.285e-01	0.9563	117.0	14.85%	7293.5	15.30%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.209e-01	0.9596	7.0	0.89%	469.5	0.98%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.168e-01	0.9597	32.0	4.06%	2055.9	4.31%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.168e-01	0.9597	5.0	0.63%	339.0	0.71%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.029e-01	0.9655	23.0	2.92%	1498.7	3.14%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.999e-01	0.9655	9.0	1.14%	606.7	1.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.946e-01	0.9658	5.0	0.63%	346.0	0.73%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.869e-01	0.9695	57.0	7.23%	3635.4	7.62%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.850e-01	0.9695	3.0	0.38%	213.0	0.45%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.848e-01	0.9695	1.0	0.13%	69.6	0.15%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.845e-01	0.9695	17.0	2.16%	1128.0	2.37%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.829e-01	0.9695	72.0	9.14%	4569.7	9.58%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-3.641e-01	0.9728	2.0	0.25%	146.3	0.31%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.599e-01	0.9731	15.0	1.90%	1011.9	2.12%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.468e-01	0.9821	13.0	1.65%	888.5	1.86%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-3.445e-01	0.9821	149.0	18.91%	9360.8	19.63%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.384e-01	0.9830	68.0	8.63%	4365.2	9.16%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.229e-01	0.9945	6.0	0.76%	435.0	0.91%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.182e-01	0.9955	35.0	4.44%	2314.6	4.85%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.073e-01	1.0000	15.0	1.90%	1039.2	2.18%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-3.057e-01	1.0000	23.0	2.92%	1558.6	3.27%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.000e-01	1.0000	21.0	2.66%	1433.0	3.01%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.996e-01	1.0000	17.0	2.16%	1174.6	2.46%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.983e-01	1.0000	164.0	20.81%	10351.0	21.71%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.979e-01	1.0000	1.0	0.13%	82.9	0.17%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.918e-01	1.0000	18.0	2.28%	1244.8	2.61%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.907e-01	1.0000	2.0	0.25%	162.2	0.34%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.886e-01	1.0000	72.0	9.14%	4670.7	9.80%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.674e-01	1.0000	7.0	0.89%	526.5	1.10%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.513e-01	1.0000	9.0	1.14%	671.6	1.41%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.505e-01	1.0000	8.0	1.02%	604.0	1.27%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.490e-01	1.0000	6.0	0.76%	465.1	0.98%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.458e-01	1.0000	2.0	0.25%	174.3	0.37%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.362e-01	1.0000	5.0	0.63%	401.0	0.84%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.285e-01	1.0000	1.0	0.13%	96.3	0.20%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.285e-01	1.0000	1.0	0.13%	97.0	0.20%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.278e-01	1.0000	41.0	5.20%	2783.4	5.84%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.250e-01	1.0000	82.0	10.41%	5383.6	11.29%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.196e-01	1.0000	71.0	9.01%	4699.2	9.86%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.174e-01	1.0000	14.0	1.78%	1031.9	2.16%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.168e-01	1.0000	5.0	0.63%	409.9	0.86%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.163e-01	1.0000	6.0	0.76%	481.5	1.01%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.110e-01	1.0000	8.0	1.02%	625.3	1.31%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.026e-01	1.0000	34.0	4.31%	2361.6	4.95%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.020e-01	1.0000	7.0	0.89%	560.5	1.18%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.005e-01	1.0000	14.0	1.78%	1044.6	2.19%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.772e-01	1.0000	3.0	0.38%	278.6	0.58%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.740e-01	1.0000	13.0	1.65%	998.3	2.09%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.669e-01	1.0000	18.0	2.28%	1345.9	2.82%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.631e-01	1.0000	3.0	0.38%	285.0	0.60%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.450e-01	1.0000	61.0	7.74%	4190.0	8.79%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.429e-01	1.0000	2.0	0.25%	213.8	0.45%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.425e-01	1.0000	1.0	0.13%	122.6	0.26%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.390e-01	1.0000	2.0	0.25%	215.7	0.45%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.261e-01	1.0000	2.0	0.25%	222.4	0.47%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.248e-01	1.0000	50.0	6.35%	3519.3	7.38%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.210e-01	1.0000	2.0	0.25%	225.1	0.47%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.198e-01	1.0000	16.0	2.03%	1263.0	2.65%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.194e-01	1.0000	1.0	0.13%	132.9	0.28%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.185e-01	1.0000	73.0	9.26%	5017.5	10.52%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.176e-01	1.0000	2.0	0.25%	227.2	0.48%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.166e-01	1.0000	8.0	1.02%	698.2	1.46%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.165e-01	1.0000	81.0	10.28%	5534.3	11.61%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.137e-01	1.0000	37.0	4.70%	2689.5	5.64%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.118e-01	1.0000	8.0	1.02%	703.4	1.48%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.113e-01	1.0000	5.0	0.63%	477.4	1.00%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.079e-01	1.0000	42.0	5.33%	3031.3	6.36%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.056e-01	1.0000	1.0	0.13%	139.2	0.29%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.014e-01	1.0000	135.0	17.13%	8999.9	18.88%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.012e-01	1.0000	64.0	8.12%	4482.4	9.40%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-9.981e-02	1.0000	106.0	13.45%	7174.8	15.05%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-8.719e-02	1.0000	1.0	0.13%	151.0	0.32%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.519e-02	1.0000	6.0	0.76%	582.3	1.22%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-8.206e-02	1.0000	5.0	0.63%	507.1	1.06%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.516e-02	1.0000	6.0	0.76%	595.3	1.25%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.107e-02	1.0000	13.0	1.65%	1127.0	2.36%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.966e-02	1.0000	18.0	2.28%	1488.9	3.12%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.842e-02	1.0000	30.0	3.81%	2323.5	4.87%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.732e-02	1.0000	1.0	0.13%	165.8	0.35%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.688e-02	1.0000	6.0	0.76%	607.3	1.27%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.004e-02	1.0000	6.0	0.76%	618.1	1.30%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-5.771e-02	1.0000	1.0	0.13%	174.8	0.37%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.678e-02	1.0000	27.0	3.43%	2151.9	4.51%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.026e-02	1.0000	24.0	3.05%	1963.9	4.12%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-4.804e-02	1.0000	2.0	0.25%	291.2	0.61%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.671e-02	1.0000	2.0	0.25%	293.5	0.62%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.520e-02	1.0000	2.0	0.25%	313.0	0.66%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.291e-02	1.0000	23.0	2.92%	2016.7	4.23%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.186e-02	1.0000	6.0	0.76%	717.7	1.51%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.865e-02	1.0000	6.0	0.76%	732.5	1.54%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.712e-02	1.0000	1.0	0.13%	246.3	0.52%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.546e-02	1.0000	28.0	3.55%	2437.8	5.11%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.371e-02	1.0000	3.0	0.38%	483.9	1.01%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.309e-02	1.0000	52.0	6.60%	4147.6	8.70%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.195e-02	1.0000	29.0	3.68%	2549.9	5.35%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.171e-02	1.0000	3.0	0.38%	495.9	1.04%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.957e-03	1.0000	2.0	0.25%	436.8	0.92%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-3.850e-03	1.0000	8.0	1.02%	1055.2	2.21%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.557e-03	1.0000	41.0	5.20%	3729.7	7.82%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-8.400e-04	1.0000	24.0	3.05%	2533.1	5.31%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.800e-05	1.0000	41.0	5.20%	4325.2	9.07%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	129.9	0.27%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	66.2	0.14%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	16.5	0.03%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	14.9	0.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	16.1	0.03%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	34.3	0.07%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	171.3	0.36%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	49.4	0.10%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	28.7	0.06%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	27.6	0.06%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	6.8	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	7.8	0.02%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	46.8	0.10%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	11.0	0.02%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	0.000e+00	1.0000	0.0	0.00%	210.0	0.44%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	0.000e+00	1.0000	0.0	0.00%	90.7	0.19%