Information for 7-CTTGGTCAAG (Motif 7)

A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G
Reverse Opposite:
A G T C C G A T A C G T A C T G G T C A A T G C A G T C C G T A C G T A A C T G
p-value:1e-14
log p-value:-3.378e+01
Information Content per bp:1.897
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif181.9
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets53.5 +/- 31.8bp
Average Position of motif in Background51.0 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CTTGGTCAAG
TATAAGTAGGTCAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGTCAAG--
NNAATTAGTCACGGT
 A C G T A C G T A C G T A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTTGGTCAAG----
--AGGTCAAGGTCA
 A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTTGGTCAAG
AAYTAGGTCA--
 A C G T A C G T A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTTGGTCAAG
ACTAGTTAAC
 A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTTGGTCAAG----
--AGGTCAAGGTCA
 A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTTGGTCAAG
ATCAAGGTCA--
 A C G T A C G T A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTTGGTCAAG
TGCTGAGTCA--
 A C G T A C G T A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G
C G A T T A C G T G A C G A C T C A T G C G T A T A C G A C G T G T A C C T G A A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTTGGTCAAG-
---AGTCACGC
 A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G A C G T
A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTTGGTCAAG
--AGGTCA--
 A G T C A C G T C G A T C T A G A T C G A C G T A G T C C G T A C G T A T C A G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T