Information for 6-TGCTTTTTAAAAG (Motif 3)

A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G
Reverse Opposite:
G T A C A C G T A C G T G A C T G A C T C G T A C G T A T C G A C G T A C G T A C T A G G T A C C G T A
p-value:1e-11
log p-value:-2.736e+01
Information Content per bp:1.792
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif24.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets59.0 +/- 27.6bp
Average Position of motif in Background57.6 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGCTTTTTAAAAG-
--GNCTATAAAAGG
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G A C G T
A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGCTTTTTAAAAG
NNNNTTTTTTTTTNAAC
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGCTTTTTAAAAG-
---NTTTTACGAGN
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G A C G T
A C G T A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGCTTTTTAAAAG-
--TTTCTNAGAAAN
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G A C G T
A C G T A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGCTTTTTAAAAG
--CGGTTTCAAA-
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGCTTTTTAAAAG
---NATTCAAAT-
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TGCTTTTTAAAAG-
----TTTTATKRGG
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TGCTTTTTAAAAG-
----TTTTATTRGN
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGCTTTTTAAAAG----
-NAATTTTACGAGNTNN
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G A C G T A C G T A C G T A C G T
A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGCTTTTTAAAAG----
-ANATTTTACGAGNNNN
 A C G T A C T G G A T C C G A T A C G T A G C T C G A T G C A T C T G A C G T A C G T A C G T A C A T G A C G T A C G T A C G T A C G T
A C G T G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T