Information for 2-WYSCSGKWYCKTGMTR (Motif 3)

C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G
Reverse Opposite:
G A T C C G T A A C T G A G T C C G T A G T C A A C T G C T G A G C A T G T A C A G T C A T G C A C T G A T G C C T G A C G A T
p-value:1e-12
log p-value:-2.768e+01
Information Content per bp:1.763
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets24.8 +/- 18.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:WYSCSGKWYCKTGMTR
------TTGCGTGCVA
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.51
Offset:4
Orientation:forward strand
Alignment:WYSCSGKWYCKTGMTR---
----GGCCYCCTGCTGDGH
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:WYSCSGKWYCKTGMTR
----GGGTACGTGC--
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G
A C G T A C G T A C G T A C G T C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:WYSCSGKWYCKTGMTR--
------CCCCCTGCTGTG
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

E-box(bHLH)/Promoter/Homer

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:WYSCSGKWYCKTGMTR
--CCGGTCACGTGA--
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G
A C G T A C G T A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:WYSCSGKWYCKTGMTR-----
------NNTCCTGCTGTGNNN
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:WYSCSGKWYCKTGMTR-----
------TCNCCTGCTGNGNNN
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:WYSCSGKWYCKTGMTR-----
------TNTCCTGCTGTGNNG
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:WYSCSGKWYCKTGMTR
---BNTGDCCTTG---
 C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G
A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----WYSCSGKWYCKTGMTR
NNNNATGCGGGTNNNN----
 A C G T A C G T A C G T A C G T C G T A A G C T T A C G A G T C A T C G A C T G A C T G C G T A A G C T A G T C A C G T A C G T A C T G G T A C A C G T C T A G
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T