Information for 9-TRGATGGCYM (Motif 16)

A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C
Reverse Opposite:
A C T G T C G A A C T G A G T C A G T C C G T A A C G T A G T C A G T C C G T A
p-value:1e-4
log p-value:-1.109e+01
Information Content per bp:1.871
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif65.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets45.5 +/- 30.8bp
Average Position of motif in Background48.7 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TRGATGGCYM
GTTAATGGCC-
 A C G T A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TRGATGGCYM
AACAGATGGC--
 A C G T A C G T A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TRGATGGCYM
TGATTRATGGCY-
 A C G T A C G T A C G T A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TRGATGGCYM-
CAAGATGGCGGC
 A C G T A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TRGATGGCYM
ATGATKGATGRC--
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TRGATGGCYM--
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TRGATGGCYM-
--NTTGGCANN
 A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TRGATGGCYM--
TGATTGGCTANN
 A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TRGATGGCYM
CGTGGGTGGTCC
 A C G T A C G T A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TRGATGGCYM
-GGTTGGCAT
 A C G T C T A G A C T G C G T A A C G T A C T G A C T G A G T C A G C T G T A C
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T