Information for 7-TTGATRCCATGCAAAK (Motif 11)

G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G
Reverse Opposite:
T G A C G A C T A C G T C G A T C T A G A T G C G C T A A C G T A C T G A C T G G A C T C G T A A C G T A T G C G T C A C G T A
p-value:1e-9
log p-value:-2.269e+01
Information Content per bp:1.693
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif55.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets54.8 +/- 27.9bp
Average Position of motif in Background46.8 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:7
Orientation:forward strand
Alignment:TTGATRCCATGCAAAK---
-------TATGCWAATBAV
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:TTGATRCCATGCAAAK---
------ATATGCAAATNNN
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.61
Offset:7
Orientation:forward strand
Alignment:TTGATRCCATGCAAAK---
-------WATGCAAATGAG
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:TTGATRCCATGCAAAK
------TTATGCAAAT
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TTGATRCCATGCAAAK
-------TATGCAAAT
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TTGATRCCATGCAAAK
------ATATGCAAAT
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TTGATRCCATGCAAAK----
----TTGTATGCAAATTAGA
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TTGATRCCATGCAAAK----
----TTGTATGCAAATTAGA
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTGATRCCATGCAAAK----
----TTGTATGCAAATTAGA
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTGATRCCATGCAAAK
-GGTTGCCATGGCAA-
 G C A T C A G T T A C G C G T A C G A T C T G A G T A C G T A C G T C A C G A T A T C G A G T C C G T A C G T A C G T A A C T G
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T