Information for 1-TAAAAABTCHDCTGGT (Motif 1)

A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C C G T A A C T G G A C T C A G T C T A G C G T A T A G C C G A T A C G T A C G T A C G T A G C T C G T A
p-value:1e-14
log p-value:-3.311e+01
Information Content per bp:1.801
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.7 +/- 20.1bp
Average Position of motif in Background52.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TAAAAABTCHDCTGGT
GGCAAAAGTCCAATAA-
 A C G T A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TAAAAABTCHDCTGGT
--AAAAGTCAA-----
 A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:3
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TAAAAABTCHDCTGGT
GCAAAACATTACTA--
 A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TAAAAABTCHDCTGGT
GAAAAAATTGCAAGG--
 A C G T A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TAAAAABTCHDCTGGT---
---AAATTCAAGTGGNTTN
 A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:TAAAAABTCHDCTGGT---
---AANTTCAAGTGGCTTN
 A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----TAAAAABTCHDCTGGT
CCAATAAAAA----------
 A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.48
Offset:6
Orientation:forward strand
Alignment:TAAAAABTCHDCTGGT-------
------GAAAACTAGTTAACATC
 A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.47
Offset:-5
Orientation:forward strand
Alignment:-----TAAAAABTCHDCTGGT
NCYAATAAAA-----------
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----TAAAAABTCHDCTGGT
CCAATAAAAA----------
 A C G T A C G T A C G T A C G T A C G T C T G A G T C A C G T A C G T A C G T A A T C G A C G T A G T C G C T A C A G T A G T C A C G T C T A G A C T G A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T