Information for 8-CAATGGCGGA (Motif 9)

A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
Reverse Opposite:
C A G T A G T C T A G C A T C G G A T C A T G C C G T A C A G T A C G T T A C G
p-value:1e-11
log p-value:-2.674e+01
Information Content per bp:1.684
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.86%
Number of Background Sequences with motif644.3
Percentage of Background Sequences with motif1.36%
Average Position of motif in Targets51.4 +/- 21.0bp
Average Position of motif in Background50.2 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:CAATGGCGGA-
TAATGGCGGNC
 A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A A C G T
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CAATGGCGGA
VRAACAATGG----
 A C G T A C G T A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CAATGGCGGA
AACAAAGG----
 A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CAATGGCGGA
RACAAWGG----
 A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CAATGGCGGA
GAACAATGG----
 A C G T A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CAATGGCGGA
GAACAATGGN---
 A C G T A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CAATGGCGGA
RAACAATGGN---
 A C G T A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------CAATGGCGGA-
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CAATGGCGGA
CTCACACAATGGCGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CAATGGCGGA
AAAACAATGG----
 A C G T A C G T A C G T A C G T A T G C T G C A G T C A G C A T A T C G C T A G T A G C A T C G C T A G G T C A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T