Information for 5-TGGCAGCCAT (Motif 3)

C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T
Reverse Opposite:
C T G A G C A T A T C G C A T G G A T C A C G T C T A G A G T C G T A C G T C A
p-value:1e-24
log p-value:-5.746e+01
Information Content per bp:1.647
Number of Target Sequences with motif144.0
Percentage of Target Sequences with motif16.27%
Number of Background Sequences with motif2936.4
Percentage of Background Sequences with motif6.22%
Average Position of motif in Targets48.2 +/- 22.7bp
Average Position of motif in Background51.0 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGGCAGCCAT----
--GCNGCCATCTTG
 C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGGCAGCCAT--
-GTCCGCCATTA
 C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T A C G T A C G T
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGGCAGCCAT----
--GCCGCCATCTTG
 C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGCCAT
AGGTGHCAGACA-
 A C G T A C G T A C G T C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGCCAT
AGGTGNCAGACAG
 A C G T A C G T A C G T C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGGCAGCCAT
--BCAGACWA
 C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCCAT
VBTGWCAGCB--
 A C G T A C G T C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCCAT
CTTGGCAA----
 A C G T A C G T C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGGCAGCCAT
---CAGCC--
 C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGCCAT
TTGGCA-----
 A C G T C A G T A C T G T C A G G A T C T G C A C T A G G T A C T A G C C G T A G A C T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T