Information for 3-TRATTAAAAMCAG (Motif 3)

C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
Reverse Opposite:
G T A C C G A T A C T G A C G T G C A T C G A T G C A T G A C T G T C A T C G A C G A T A G C T G C T A
p-value:1e-37
log p-value:-8.537e+01
Information Content per bp:1.600
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif9.53%
Number of Background Sequences with motif729.3
Percentage of Background Sequences with motif1.54%
Average Position of motif in Targets52.5 +/- 23.2bp
Average Position of motif in Background51.1 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TRATTAAAAMCAG--
TGACANARRCCAGRC
 C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TRATTAAAAMCAG----
YTAATTRAWWCCAGATGT
 A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G A C G T A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TRATTAAAAMCAG
CGAATTAATTAAAAACC-
 A C G T A C G T A C G T A C G T A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TRATTAAAAMCAG
GGGTTTAATTAAAATTC-
 A C G T A C G T A C G T A C G T A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C A C G T

PH0101.1_Lmx1b/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TRATTAAAAMCAG
NNAATTAATTAAAAANN-
 A C G T A C G T A C G T A C G T A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TRATTAAAAMCAG
CCATAATTAATTACA-
 A C G T A C G T A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A A C G T

Lhx4/MA0704.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TRATTAAAAMCAG
TTAATTAA------
 A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
A G C T G A C T T C G A C G T A C G A T A C G T C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PH0091.1_Lhx1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TRATTAAAAMCAG
CGAATTAATTAATAATG-
 A C G T A C G T A C G T A C G T A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G A C G T

LMX1A/MA0702.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TRATTAAAAMCAG
TTAATTAA------
 A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
A G C T G A C T C T G A G C T A G C A T C G A T C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

mix-a/MA0621.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TRATTAAAAMCAG
NCTAATTAANN----
 A C G T A C G T C G A T T C G A C G T A A G C T C A G T C T G A C G T A G C T A C G T A T G C A G T A C G C T A A C T G
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T A C G T A C G T A C G T A C G T