Information for 17-CTGACAGACG (Motif 20)

A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G
Reverse Opposite:
G T A C T C A G A G C T A T G C C G A T A C T G A C G T A G T C C G T A A C T G
p-value:1e-7
log p-value:-1.815e+01
Information Content per bp:1.848
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif123.5
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets46.5 +/- 27.4bp
Average Position of motif in Background49.3 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTGACAGACG
TTGACAG---
 A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CTGACAGACG
VBTGWCAGCB-
 A C G T A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CTGACAGACG
AGGTGHCAGACA
 A C G T A C G T A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CTGACAGACG
RHTGWCAR---
 A C G T A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTGACAGACG
TTGACAGC--
 A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTGACAGACG
ARNTGACA----
 A C G T A C G T A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTGACAGACG-
AGGTGNCAGACAG
 A C G T A C G T A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTGACAGACG
TTGACAGG--
 A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTGACAGACG---
NNATTGACAGGTGCTT
 A C G T A C G T A C G T A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G A C G T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTGACAGACG---
---CCAGACRSVB
 A G T C C G A T A C T G G T C A A G T C C G T A A T C G C T G A A G T C C A T G A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C