Information for 7-RYTTCTGCMAAAATRT (Motif 12)

C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
Reverse Opposite:
G C T A G A T C C G T A C G A T A G C T C G A T A C G T A C G T A T C G G T A C C G T A A C T G C T G A C T G A C T A G G A C T
p-value:1e-10
log p-value:-2.496e+01
Information Content per bp:1.756
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif39.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets53.5 +/- 22.1bp
Average Position of motif in Background41.1 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0145.1_Mafb_2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:RYTTCTGCMAAAATRT
-CAATTGCAAAAATAT
 C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

STAT3/MA0144.2/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RYTTCTGCMAAAATRT
-CTTCTGGGAAA----
 C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
A C G T A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RYTTCTGCMAAAATRT
---GGTGCCAAGT---
 C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RYTTCTGCMAAAATRT
--TTCTTGGAAAN---
 C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
A C G T A C G T A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T A C G T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RYTTCTGCMAAAATRT
NTTTCTNAGAAA----
 C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T A C G T A C G T A C G T

Stat6/MA0520.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RYTTCTGCMAAAATRT
CATTTCCTGAGAAAT--
 A C G T C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RYTTCTGCMAAAATRT
--TTATGCAAAT----
 C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

STAT1/MA0137.3/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RYTTCTGCMAAAATRT
-TTTCCAGGAAA----
 C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
A C G T A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--RYTTCTGCMAAAATRT
TNNATTATGCATANNTT-
 A C G T A C G T C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:RYTTCTGCMAAAATRT
----TTGCCAAG----
 C T G A A G T C A G C T A G C T G T A C C G A T C A T G T A G C G T C A T G C A C G T A C T G A C G T A C G A T C T A G C G A T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T