Information for 13-TTYCCTTGGAAMY (Motif 22)

A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T
Reverse Opposite:
C T G A C A G T A G C T A G C T A G T C A G T C C G T A C G T A A C T G A C T G C T A G C T G A C G T A
p-value:1e-7
log p-value:-1.784e+01
Information Content per bp:1.799
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif34.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets63.4 +/- 18.6bp
Average Position of motif in Background47.9 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTYCCTTGGAAMY-
TTGCCATGGCAACN
 A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTYCCTTGGAAMY-
TTGCCATGGCAACC
 A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

EBF1/MA0154.3/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TTYCCTTGGAAMY
ANTCCCTNGGGAAT
 A C G T A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T
C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTYCCTTGGAAMY
GTTGCCATGGCAAC
 A C G T A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TTYCCTTGGAAMY
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTYCCTTGGAAMY--
GTTGCCATGGCAACCG
 A C G T A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTYCCTTGGAAMY-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTYCCTTGGAAMY
GTCCCCAGGGGA--
 A C G T A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTYCCTTGGAAMY
-TCCCNNGGGACN
 A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T
A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTYCCTTGGAAMY-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A G C T A G T C A G T C A G T C C G A T A C G T A C T G A C T G C T G A C T G A G T C A A G C T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G