Information for 9-CCGGAGCAGGCAA (Motif 17)

A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A
Reverse Opposite:
A C G T A C G T A T C G A G T C A G T C G A C T A C T G A G T C A C G T A G T C A G T C A C T G A T C G
p-value:1e-9
log p-value:-2.247e+01
Information Content per bp:1.934
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets30.5 +/- 14.7bp
Average Position of motif in Background47.5 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCGGAGCAGGCAA
-CGGAGC------
 A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CCGGAGCAGGCAA----
------AAGGCAAGTGT
 A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGGAGCAGGCAA
CCACACAGCAGGAGA
 A C G T A C G T A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGGAGCAGGCAA
CCACACAGCAGGAGA
 A C G T A C G T A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCGGAGCAGGCAA
-GGGAGGACNG--
 A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A
A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCGGAGCAGGCAA
-CACAGCAGGGGG
 A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCGGAGCAGGCAA
GAGCACAGCAGGACA
 A C G T A C G T A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCGGAGCAGGCAA
AAGGKGRCGCAGGCA-
 A C G T A C G T A C G T A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCGGAGCAGGCAA-
----NACAGGAAAT
 A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCGGAGCAGGCAA-
----NACAGGAAAT
 A T G C A G T C A C T G A C T G C G T A A C T G G T A C C G T A A C T G A C T G A T G C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T