Information for 3-AATTAGAAACAGA (Motif 3)

C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A
Reverse Opposite:
A G C T A T G C C G A T A C T G A C G T C G A T A C G T G A T C A G C T C G T A C T G A C A G T G A C T
p-value:1e-21
log p-value:-5.001e+01
Information Content per bp:1.764
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif31.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets58.5 +/- 22.1bp
Average Position of motif in Background42.8 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AATTAGAAACAGA---
YTAATTRAWWCCAGATGT
 A C G T A C G T C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AATTAGAAACAGA
AAATAAGAAAAAAC
 A C G T C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAACAGA
CCGTATTATAAACAA-
 A C G T A C G T A C G T C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AATTAGAAACAGA
-WWTRTAAACAVG
 C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A
A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

FOXP1/MA0481.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AATTAGAAACAGA-
CAAAAGTAAACAAAG
 A C G T C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A A C G T
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AATTAGAAACAGA
WWATRTAAACAN-
 C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A
G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A A C G T

MIXL1/MA0662.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAACAGA
TCTAATTAAC------
 A C G T A C G T A C G T C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A
C G A T A G T C G A C T T C G A G C T A A G C T A G C T G C T A T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AATTAGAAACAGA
CGAATTAATTAAAAACC--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AATTAGAAACAGA-
---TGTAAACAGGA
 C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A A C G T
A C G T A C G T A C G T C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A

Shox2/MA0720.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AATTAGAAACAGA
CTAATTAA-------
 A C G T A C G T C G T A G C T A A G C T G C A T C T G A C T A G G T C A C G T A G T C A G T A C C G T A A T C G C T G A
A G T C G A C T G C T A G T C A G C A T C A G T G C T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T